PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016649619.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family B3
Protein Properties Length: 148aa    MW: 16786.2 Da    PI: 4.6365
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016649619.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B338.91.6e-1233121196
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE.E-SSSEE..EE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk.ldgrsefelvv 94 
                     f+ vlt+ +   + +lv+p +f ++      +s   t+ + +g+ We+ +   ++s++  l  +Wk F+ +n+Lk+gD +vF+ l+  s+++lv+
  XP_016649619.1  33 FDVVLTKTNIEHLYQLVVPGRFSATLP---SCS-IPTVLTFRGKNWEMIY--HGSSSHKRLD-NWKAFAIDNNLKVGDACVFEqLEC-SSTRLVF 119
                     556677777777799999999987763...344.4577889*********..8888877787.********************5444.5555554 PP

                     EE CS
              B3  95 kv 96 
                     +v
  XP_016649619.1 120 RV 121
                     43 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.5E-1430123IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.5E-1730122IPR015300DNA-binding pseudobarrel domain
CDDcd100173.44E-1831125No hitNo description
SMARTSM010190.001833127IPR003340B3 DNA binding domain
PfamPF023622.1E-1033120IPR003340B3 DNA binding domain
PROSITE profilePS5086310.43333127IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
MKGEPQMGDL LTSNPVIELE GDEFWPLSWK PFFDVVLTKT NIEHLYQLVV PGRFSATLPS  60
CSIPTVLTFR GKNWEMIYHG SSSHKRLDNW KAFAIDNNLK VGDACVFEQL ECSSTRLVFR  120
VQILRGDIPS EFLDKLDGDN VDAPIVLE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008232178.11e-107PREDICTED: B3 domain-containing protein Os04g0386900-like
TrEMBLM5X1G41e-99M5X1G4_PRUPE; Uncharacterized protein